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Table 1 PCR primers for HPV testing

From: Does HPV type affect outcome in oropharyngeal cancer?

Name

Sequence 5′ to 3′

GAPDH Forward

GCTCATTTGCAGGGGGGAGCC

GAPDH Reverse

CTGATGATCTTGAGGCTGTTG

GAPDH Probe

CY5-TCTGCCCCCTCTGCTGATGCCCCCATGTTCGTCATGGGA –BHQ2

HPV 16 Forward

TTGCAGATCATCAAGAACACGTAGA

HPV 16 Reverse

GTAGAGATCAGTTGTCTCTGGTTGC

HPV 16 Probe

JOE-AATCATGCATGGAGATACACCTACATTGCATGA –BHQ1

HPV 18 Forward

CAACCGAGCACGACAGGAACG

HPV 18 Reverse

TAGAAGGTCAACCGGAATTTTCAT

HPV 18 Probe

ROX-AATATTAAGTATGCATGGACCTAAGGCAACATTGCAA –BHQ2

HPV all Forward (E1)

CCTATAGTACATTTAAAAGGTG

HPV all Reverse (E1)

CNTGTCCAATGCCAGGTAGATG

HPV all Probe (E1)

FAM-AATAGTTTAAAATGTTTAAGATATAG-BHQ1

HPV other Forward (E2)

GCATTATATTGGTATAGAACAGG

HPV other Reverse (E2)

TCATTRTCASATGCCCATTGYACC

  1. HPV human papillomavirus; R puRine (A or T); S Strong (C or G); Y pYrimidine (C or T).